Index

_

_calculate_enfc() (lta.helpers.pipeline.Pipeline method) _get_a_lipids() (lta.helpers.pipeline.Pipeline method)

_get_b_lipids() (lta.helpers.pipeline.Pipeline method) _get_n_lipids() (lta.helpers.pipeline.Pipeline method) _jaccard() (lta.helpers.pipeline.Pipeline method)

B

binary_df() (in module tests.conftest)

C

compartment (lta.helpers.pipeline.Pipeline attribute) construct_df() (in module lta.helpers.data_handling)

control (lta.helpers.pipeline.Pipeline attribute) create_df() (in module tests.conftest)

E

enfc() (in module lta.helpers.data_handling)

F

file (lta.helpers.pipeline.Pipeline attribute)

FloatRange (class in lta.helpers.custom_types)

L

level (lta.helpers.pipeline.Pipeline attribute) lta.cli module lta.commands module lta.commands.run module lta.helpers.custom_types module

lta.helpers.data_handling module lta.helpers.pipeline module lta.parser module lta_parser (in module lta.parser)

M

main() (in module lta.cli) mode (lta.helpers.pipeline.Pipeline attribute) module lta.cli lta.commands lta.commands.run lta.helpers.custom_types lta.helpers.data_handling lta.helpers.pipeline lta.parser tests.conftest tests.integration tests.integration.test_cli tests.unit tests.unit.test_commands_run tests.unit.test_helpers_custom_types tests.unit.test_helpers_pipeline tests.unit.test_parser

N

n (lta.helpers.pipeline.Pipeline attribute)

n_rows_metadata (lta.helpers.pipeline.Pipeline attribute) not_zero() (in module lta.helpers.data_handling)

O

output (lta.helpers.pipeline.Pipeline attribute)

P

Pipeline (class in lta.helpers.pipeline)

R

run() (in module lta.commands.run) (lta.helpers.pipeline.Pipeline method)

S

sample_id (lta.helpers.pipeline.Pipeline attribute)

T

test_correct_usage() (in module tests.unit.test_parser) test_default_func() (in module tests.unit.test_parser) test_echoes_text() (in module tests.integration.test_cli) test_FloatRange_attributes() (in module tests.unit.test_helpers_custom_types) test_FloatRange_contains() (in module tests.unit.test_helpers_custom_types) test_FloatRange_iter() (in module tests.unit.test_helpers_custom_types) test_FloatRange_repr() (in module tests.unit.test_helpers_custom_types) test_prints_text() (in module tests.unit.test_commands_run) test_raise_NotDir() (in module tests.unit.test_helpers_pipeline) test_raise_NotFound() (in module tests.unit.test_helpers_pipeline) test_raise_Runtime() (in module tests.unit.test_helpers_pipeline) tests.conftest module tests.integration module

tests.integration.test_cli module tests.unit module tests.unit.test_commands_run module tests.unit.test_helpers_custom_types module tests.unit.test_helpers_pipeline module tests.unit.test_parser module thresh (lta.helpers.pipeline.Pipeline attribute)